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HelpTest Code 170169 NGS SOLID TISSUE REPORT
Test ID
1789
Container Type
| Laboratory | Container | Default | Temperature | Minimum Volume |
|---|---|---|---|---|
| NGS LAB | STERILE CONTAINER | Yes |
Performing Section
NGS LAB
Components
| Component Name | Component ID | LOINC Code |
|---|---|---|
| CASE SUMMARY | 43600030 | |
| HUMAN REFERENCE SEQUENCE ASSEMBLY | 43650010 | 62374-4 (Human reference sequence assembly release number:ID:Pt:Bld/Tiss:Nom:Molgen) |
| VARIANT CATEGORY | 43650015 | 83005-9 (Variant category:Type:Pt:^Patient:Nom:) |
| GENE STUDIED | 43650017 | 48018-6 (Gene identifier:ID:Pt:Bld/Tiss:Nom:Molgen) |
| TRANSCRIPT REFERENCE SEQUENCE ID | 43650018 | 51958-7 (Transcript reference sequence identifier:ID:Pt:Bld/Tiss:Nom:Molgen) |
| DNA CHANGE | 43650019 | 48004-6 (DNA change:Find:Pt:Bld/Tiss:Nom:Molgen) |
| AMINO ACID CHANGE | 43650020 | 48005-3 (Amino acid change:Find:Pt:Bld/Tiss:Nom:Molgen) |
| DNA CHANGE TYPE | 43650021 | 48019-4 (DNA change type:Type:Pt:Bld/Tiss:Nom:Molgen) |
| AMINO ACID CHANGE TYPE | 43650022 | 48006-1 (Amino acid change type:Type:Pt:Bld/Tiss:Nom:Molgen) |
| GENOMIC REFERENCE ALLELE | 43650025 | 69547-8 (Reference nucleotide:Prid:Pt:Bld/Tiss:Nom:Molgen) |
| GENOMIC ALLELE START/END | 43650026 | 81254-5 (Genomic allele start-end:ID:Pt:^Patient:Nom:) |
| GENOMIC ALT ALLELE | 43650027 | 69551-0 (Variable nucleotide:Prid:Pt:Bld/Tiss:Nom:Molgen) |
| CYTOGENETIC LOCATION | 43650028 | 48001-2 (Chromosome region:ID:Pt:Bld/Tiss:Nom:Molgen) |
| GENOMIC SOURCE CLASS | 43650029 | 48002-0 (Genomic source class:Type:Pt:Bld/Tiss:Nom:Molgen) |
| VARIANT ANALYSIS METHOD TYPE | 43650030 | 81304-8 (Structural variant analysis method:Type:Pt:^Patient:Nom:) |
| GENETIC SEQUENCE VARIATION CLINICAL SIGNIFICANCE | 43650031 | 53037-8 (Genetic disease sequence variation interpretation:Imp:Pt:Bld/Tiss:Nom:Molgen) |
| VARIANT ALLELIC FREQUENCY | 43650034 | 81258-6 (Allelic frequency:NFr:Pt:^Patient:Qn:) |
| ALLELIC READ DEPTH | 43650035 | 82121-5 (Allelic read depth:Num:Pt:^Patient:Qn:) |
| ALLELIC PHASE | 43650036 | 82120-7 (Allelic phase:Type:Pt:^Patient:Nom:) |
| BASIS FOR ALLELIC PHASE | 43650037 | 82309-6 (Basis for allelic phase:Type:Pt:^Patient:Nom:) |
| STRUCTURAL COPY NUMBER | 43650038 | 82155-3 (Genomic structural variant copy number:Num:Pt:^Patient:Qn:) |
| STRUCTURAL REPORTED ARRCGH RATIO | 43650039 | 81299-0 (Structural variant reported arrCGH:Ratio:Pt:^Patient:Qn:) |
| STRUCTURAL VARIANT LENGTH | 43650040 | 81300-6 (Structural variant:Len:Pt:^Patient:Qn:) |
| STRUCTURAL OUTER START/END | 43650041 | 81301-4 (Structural variant outer start-end:NumRange:Pt:^Patient:Qn:) |
| STRUCTURAL INNER START/END | 43650042 | 81302-2 (Structural variant inner start-end:NumRange:Pt:^Patient:Qn:) |
| VARIANT DISPLAY NAME | 43650043 | 47998-0 (DNA sequence variation display name:Txt:Pt:Bld/Tiss:Nar:Molgen) |
| CHROMOSOME | 43650044 | 48000-4 (Chromosome:ID:Pt:Bld/Tiss:Nom:Molgen) |
| DNA REGION | 43650045 | 47999-8 (DNA region name:ID:Pt:Bld/Tiss:Nom:Molgen) |
| FUSED GENES | 43650051 | |
| GENETIC VARIANT ASSESSMENT | 43650052 | 69548-6 (Genetic variant assessment:Find:Pt:Bld/Tiss:Nom:Molgen) |
| INTERPRETATION | 43650053 | |
| REASON FOR STUDY | 43600001 | 53577-3 (Reason for study additional note:Txt:Pt:Bld/Tiss:Nar:Molgen) |
| DESCRIPTION OF RANGES OF DNA SEQUENCES EXAMINED | 43600003 | 81293-3 (Range(s) of DNA sequences examined:Txt:Pt:^Patient:Nar:) |
| OVERALL INTERPRETATION | 43600004 | 51968-6 (Genetic disease analysis overall interpretation:Imp:Pt:Bld/Tiss:Nom:Molgen) |
| MSI | 43600005 | 81695-9 (Microsatellite instability:Imp:Pt:Cancer specimen:Ord:) |
| ANSWER REPORT | 43600026 | |
| TUMOR MUTATIONAL BURDEN INTERPRETATION | 43600027 | |
| TMB | 43600007 | 48025-1 (Gene mutations tested for:Num:Pt:Bld/Tiss:Qn:Molgen) |